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Gene name
Human disease related genes
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Within tissue variation
UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
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Gene name
Class
Cancers
Cardiovascular diseases
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Endocrine and metabolic diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
MT
Unmapped
X
Y
External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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91 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ANXA10
ENSSSCG00000030058
ENSG00000109511
Annexin A10
Tissue enriched
Detected in some
stomach:
84.3
ARL14
ENSSSCG00000011734
ENSG00000179674
ADP ribosylation factor like GTPase 14
Tissue enriched
Detected in some
large intestine:
42.9
ATP4A
ENSSSCG00000002902
ENSG00000105675
Potassium-transporting ATPase alpha chain 1
Tissue enriched
Detected in many
stomach:
31.9
BTNL2
ENSSSCG00000025071
ENSG00000204290
Butyrophilin like 2
Tissue enriched
Detected in some
small intestine:
46.2
C15orf48
ENSSSCG00000004670
ENSG00000166920
Chromosome 15 open reading frame 48
Tissue enriched
Detected in many
large intestine:
98.8
CA1
ENSSSCG00000040770
ENSG00000133742
Carbonic anhydrase 1
Tissue enriched
Detected in some
large intestine:
179.5
CAPN8
ENSSSCG00000034746
ENSG00000203697
Calpain 8
Tissue enriched
Detected in many
stomach:
105.0
CAPN9
ENSSSCG00000010182
ENSG00000135773
Calpain 9
Tissue enriched
Detected in some
stomach:
51.2
CLDN18
ENSSSCG00000011657
ENSG00000066405
Claudin-18 precursor
Tissue enriched
Detected in some
stomach:
139.2
CPO
ENSSSCG00000016135
ENSG00000144410
Carboxypeptidase O
Tissue enriched
Detected in many
small intestine:
23.6
ETHE1
ENSSSCG00000003064
ENSG00000105755
ETHE1, persulfide dioxygenase
Tissue enriched
Detected in all
large intestine:
109.6
FABP6
ENSSSCG00000017037
ENSG00000170231
Gastrotropin
Tissue enriched
Detected in some
small intestine:
511.8
FER1L6
ENSSSCG00000033333
ENSG00000214814
Fer-1 like family member 6
Tissue enriched
Detected in many
stomach:
67.7
GAST
ENSSSCG00000021910
ENSG00000184502
Gastrin precursor
Tissue enriched
Detected in single
stomach:
127.6
GHRL
ENSSSCG00000011568
ENSG00000157017
Appetite-regulating hormone precursor
Tissue enriched
Detected in some
stomach:
70.6
GKN1
ENSSSCG00000035529
ENSG00000169605
Gastrokine-1
Tissue enriched
Detected in single
stomach:
603.0
GKN2
ENSSSCG00000038802
ENSG00000183607
Gastrokine-2 precursor
Tissue enriched
Detected in single
stomach:
380.5
GKN3
ENSSSCG00000037028
Gastrokine-3 precursor
Tissue enriched
Detected in some
small intestine:
705.8
GLP1R
ENSSSCG00000001589
ENSG00000112164
Glucagon-like peptide 1 receptor precursor
Tissue enriched
Detected in many
small intestine:
35.0
GPER1
ENSSSCG00000026422
ENSG00000164850
G protein-coupled estrogen receptor 1
Tissue enriched
Detected in many
stomach:
73.0
HMGCS2
ENSSSCG00000036808
ENSG00000134240
Hydroxymethylglutaryl-CoA synthase, mitochondrial
Tissue enriched
Detected in all
large intestine:
116.1
INSL5
ENSSSCG00000031956
ENSG00000172410
Insulin like 5
Tissue enriched
Detected in some
large intestine:
29.2
LINC00483
ENSSSCG00000017556
ENSG00000167117
Long intergenic non-protein coding RNA 483
Tissue enriched
Detected in many
small intestine:
44.9
MEP1A
ENSSSCG00000001724
ENSG00000112818
Meprin A subunit alpha
Tissue enriched
Detected in single
small intestine:
80.9
MUC6
ENSSSCG00000012835
ENSG00000184956
Mucin 6, oligomeric mucus/gel-forming
Tissue enriched
Detected in some
small intestine:
996.3
na
ENSSSCG00000001447
Butyrophilin, subfamily 1, member precursor
Tissue enriched
Detected in many
small intestine:
40.3
na
ENSSSCG00000003011
Tissue enriched
Detected in some
large intestine:
181.3
na
ENSSSCG00000003047
Tissue enriched
Detected in some
large intestine:
291.6
na
ENSSSCG00000006792
Tissue enriched
Detected in single
stomach:
210.9
na
ENSSSCG00000006804
Tissue enriched
Detected in single
stomach:
53.1
na
ENSSSCG00000006931
Tissue enriched
Detected in some
small intestine:
56.1
na
ENSSSCG00000013530
ENSG00000130383,ENSG00000156413,ENSG00000171124
Tissue enriched
Detected in some
large intestine:
51.4
na
ENSSSCG00000014565
Tissue enriched
Detected in many
large intestine:
217.4
na
ENSSSCG00000015916
Tissue enriched
Detected in some
small intestine:
11.3
na
ENSSSCG00000016284
Tissue enriched
Detected in all
small intestine:
90.6
na
ENSSSCG00000022261
ENSG00000204616
E3 ubiquitin-protein ligase TRIM31
Tissue enriched
Detected in some
small intestine:
59.7
na
ENSSSCG00000023546
Tissue enriched
Detected in many
small intestine:
51.2
na
ENSSSCG00000027921
Tissue enriched
Detected in many
small intestine:
45.7
na
ENSSSCG00000030013
ENSG00000115850
Tissue enriched
Detected in some
small intestine:
29.7
na
ENSSSCG00000030874
Tissue enriched
Detected in single
small intestine:
63.4
na
ENSSSCG00000031177
Regenerating islet-derived protein 3-gamma precursor
Tissue enriched
Detected in some
small intestine:
14.5
na
ENSSSCG00000031542
Tissue enriched
Detected in some
large intestine:
26.7
na
ENSSSCG00000031553
Tissue enriched
Detected in some
small intestine:
36.1
na
ENSSSCG00000031826
Tissue enriched
Detected in single
small intestine:
4.4
na
ENSSSCG00000031992
Tissue enriched
Detected in many
small intestine:
52.7
na
ENSSSCG00000032158
Tissue enriched
Detected in some
small intestine:
14.2
na
ENSSSCG00000032202
Tissue enriched
Detected in single
stomach:
30.3
na
ENSSSCG00000032289
Tissue enriched
Detected in single
small intestine:
3.2
na
ENSSSCG00000032331
Tissue enriched
Detected in single
stomach:
2.5
na
ENSSSCG00000032730
Tissue enriched
Detected in some
stomach:
5.4
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